Template:  JQ680371.1 strand: + 4471-4580 ref: 4471-4580
Variable:  JQ680371.1 strand: + 4101-4210 alnlen 109 mutations 11 involve-A 11 involve-T 0

4471       CCGTGTGGTCTATCGTGGCAACAACAACGCGAACCCGAATGGCGGTGTTTCGATGTCGAATGCGAACAACGATTCCTCGAATACGAACACGAACATCGGTTCTCGTCTG 
           :::::::::::::::::::: ::::  ::::: :::: :::::::::::::::::::: ::::::::: :::::::::: :: ::: ::::: ::::::::::::::::
4101       CCGTGTGGTCTATCGTGGCAGCAACTCCGCGATCCCGCATGGCGGTGTTTCGATGTCGCATGCGAACAGCGATTCCTCGTATGCGAGCACGAGCATCGGTTCTCGTCTG