Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680371.1 strand: + 4471-4580 ref: 4471-4580

Variable:  JQ680371.1 strand: + 4101-4210 alnlen 109 mutations 11 involve-A 11 involve-T 0

CCGTGTGGTCTATCGTGGCAACAACAACGCGAACCCGAATGGCGGTGTTTCGATGTCGAATGCGAACAACGATTCCTCGAATACGAACACGAACATCGGTTCTCGTCTG (Template)
CCGTGTGGTCTATCGTGGCAGCAACTCCGCGATCCCGCATGGCGGTGTTTCGATGTCGCATGCGAACAGCGATTCCTCGTATGCGAGCACGAGCATCGGTTCTCGTCTG (Variable)