Template:  JQ680373.1 strand: - 20251-20383 ref: 20252-20384
Variable:  JQ680373.1 strand: - 20911-21043 alnlen 132 mutations 21 involve-A 21 involve-T 0

20383      CGGCAGCGCGAACAACTGGTGGGAGCGCTCTCCGAATGGCAGCAACTCCACGAATTTCTGCAATGTCAACAGCAACGGCAACGCCAACTACAACAACGCGAGCAATGCGAATGGCGTGGCCTTCGGATTCTG (revcomp)
           :::::::::: ::: :::::::: ::::::::::: :::::::  :::: ::  :::::::::::::::::::  ::::  ::::  :: :::: ::::::::  :::: :::::::::::::::: :::::
21043      CGGCAGCGCGTACATCTGGTGGGGGCGCTCTCCGAGTGGCAGCGGCTCCGCGCTTTTCTGCAATGTCAACAGCGGCGGCTCCGCCGCCTTCAACTACGCGAGCTTTGCGTATGGCGTGGCCTTCGGCTTCTG (revcomp)
Template:  JQ680373.1 strand: - 20251-20358 ref: 20252-20384
Variable:  JQ680373.1 strand: - 34186-34293 alnlen 107 mutations 15 involve-A 15 involve-T 0

20358      CGCTCTCCGAATGGCAGCAACTCCACGAATTTCTGCAATGTCAACAGCAACGGCAACGCCAACTACAACAACGCGAGCAATGCGAATGGCGTGGCCTTCGGATTCTG (revcomp)
           ::::::::: ::::::::: :::::::  :::::::: ::::: ::::::::::  ::::: ::::  :: :::::::: :::: :::::::::::::::: :::::
34293      CGCTCTCCGTATGGCAGCACCTCCACGCGTTTCTGCAGTGTCAGCAGCAACGGCGGCGCCAGCTACCGCATCGCGAGCATTGCGTATGGCGTGGCCTTCGGCTTCTG (revcomp)