Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680373.1 strand: - 20251-20383 ref: 20252-20384

Variable:  JQ680373.1 strand: - 20911-21043 alnlen 132 mutations 21 involve-A 21 involve-T 0

CGGCAGCGCGAACAACTGGTGGGAGCGCTCTCCGAATGGCAGCAACTCCACGAATTTCTGCAATGTCAACAGCAACGGCAACGCCAACTACAACAACGCGAGCAATGCGAATGGCGTGGCCTTCGGATTCTG (Template)
CGGCAGCGCGTACATCTGGTGGGGGCGCTCTCCGAGTGGCAGCGGCTCCGCGCTTTTCTGCAATGTCAACAGCGGCGGCTCCGCCGCCTTCAACTACGCGAGCTTTGCGTATGGCGTGGCCTTCGGCTTCTG (Variable)
Template:  JQ680373.1 strand: - 20251-20358 ref: 20252-20384

Variable:  JQ680373.1 strand: - 34186-34293 alnlen 107 mutations 15 involve-A 15 involve-T 0

CGCTCTCCGAATGGCAGCAACTCCACGAATTTCTGCAATGTCAACAGCAACGGCAACGCCAACTACAACAACGCGAGCAATGCGAATGGCGTGGCCTTCGGATTCTG (Template)
CGCTCTCCGTATGGCAGCACCTCCACGCGTTTCTGCAGTGTCAGCAGCAACGGCGGCGCCAGCTACCGCATCGCGAGCATTGCGTATGGCGTGGCCTTCGGCTTCTG (Variable)