Template:  JQ680374.1 strand: + 4420-4514 ref: 4420-4514
Variable:  JQ680374.1 strand: + 6492-6586 alnlen 94 mutations 12 involve-A 12 involve-T 0

4420       GCCGGCTCGGCCAACAACGCCCGCAACGTCAACTCTGACGGCACGCTGAACAGGAACAACGCCTACAACGGCAACAACGGCCTGCGCCCCGCTT 
           ::::::::::::: :: ::::::: :::::: :::::::::: :::::: : :::::: ::::::: ::::: ::  :::::::::::::::::
6492       GCCGGCTCGGCCAGCAGCGCCCGCTACGTCATCTCTGACGGCGCGCTGAGCTGGAACAGCGCCTACGACGGCGACGGCGGCCTGCGCCCCGCTT 
Template:  JQ680374.1 strand: + 4437-4514 ref: 4420-4514
Variable:  JQ680374.1 strand: + 16578-16655 alnlen 77 mutations 7 involve-A 7 involve-T 0

4437       CGCCCGCAACGTCAACTCTGACGGCACGCTGAACAGGAACAACGCCTACAACGGCAACAACGGCCTGCGCCCCGCTT 
           :::::::  :::::::::::::::: ::::::::::: ::::::::::: ::::: :: ::::::::::::::::::
16578      CGCCCGCCGCGTCAACTCTGACGGCTCGCTGAACAGGTACAACGCCTACTACGGCCACTACGGCCTGCGCCCCGCTT