Template:  ACPP01000012.1 strand: - 2331-2450 ref: 2326-2451
Variable:  ACPP01000012.1 strand: - 3102-3221 alnlen 119 mutations 11 involve-A 9 involve-T 1

2450       GGCACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (revcomp)
           ::::::::::::::::::::: :::::::::: ::::::::  ::::::: ::::: ::::::::::: :: ::: :::::::: ::::::::::::::::::::::::::::::: ::
3221       GGCACTGGAGTAGCAGTGAGAGCAGTCAGAACTACAGCTGGGTCGTGAACATTAGTTATGGCAACTTCTACTACAGCAACAAGTTCAACAGTAACATGGTGAGAGCGGTTGCAGCATTT (revcomp)
Template:  ACPP01000012.1 strand: - 2331-2445 ref: 2326-2451
Variable:  ACPP01000012.1 strand: + 56749-56863 alnlen 114 mutations 16 involve-A 15 involve-T 0
(on different strand)
2445       TGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (revcomp)
           :::::::::::::::  :::::::  ::::::::::  :::: :::::::::::::::::::: ::  ::::  ::::: :: ::::: :::::::::::::::::::::: ::
56749      TGGAGTAGCAGTGAGCGCAGTCAGGGCAACAGCTGGGGCGTGTACTTTAGTAATGGCAACTTCTACGGCAACTTCAAGTGCAGCAGTAGCATGGTGAGAGCGGTTGCAGCATTT