Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  AGXJ01000009.1 strand: - 39294-39403 ref: 39295-39404

Variable:  AGXJ01000009.1 strand: - 39664-39773 alnlen 109 mutations 9 involve-A 9 involve-T 0

GCCGTGTGGTCTATCGTGGCAACAACAACGCGAACCCGAATGGCGGTGTTTCGATGTCGAATGCGAACAACGATTCCTCGAATACGAACACGAACATCGGTTCTCGTCT (Template)
GCCGTGTGGTCTATCGTGGCTACAGCTACGCGAACCCGAATGGCGGTGTTTCGATGTCGTATGCGAACTACGATTCCTCGGGTACGTACACGAGCATCGGTTCTCGTCT (Variable)