Template:  FP929062.1 strand: + 259812-259900 ref: 259812-259900
Variable:  FP929062.1 strand: + 259133-259221 alnlen 88 mutations 14 involve-A 14 involve-T 0

259812     TTCCGCTACTAACTTCTCCAATGTCAACAACAACGGTAATGCGAACAACAACAACGCTTCTAACTCTAATGGCGTTCGCCCCGATTTC 
           ::::::::::  :::::::  ::::: :: :: :::: :::::: : :: ::::::::::: :::::: :::::::::::::: ::::
259133     TTCCGCTACTCTCTTCTCCTTTGTCAGCATCAGCGGTTATGCGACCTACTACAACGCTTCTTACTCTAGTGGCGTTCGCCCCGCTTTC 
Template:  FP929062.1 strand: + 259812-259893 ref: 259812-259900
Variable:  FP929062.1 strand: + 3028167-3028248 alnlen 81 mutations 17 involve-A 12 involve-T 3

259812     TTCCGCTACTAACTTCTCCAATGTCAACAACAACGGTAATGCGAACAACAACAACGCTTCTAACTCTAATGGCGTTCGCCC 
           ::::::: :  : ::: ::::::::: : :: ::::: ::::: :: :: :: :::::::  : ::: :::::::::::::
3028167    TTCCGCTTCCGATTTCGCCAATGTCAGCGACGACGGTTATGCGGACTACGACGACGCTTCCTATTCTTATGGCGTTCGCCC 
Template:  FP929062.1 strand: + 259814-259900 ref: 259812-259900
Variable:  FP929062.1 strand: + 3054035-3054121 alnlen 86 mutations 26 involve-A 20 involve-T 3

259814     CCGCTACTAACTTCTCCAATGTCAACAACAACGGTAATGCGAACAACAACAACGCTTCTAACTCTAATGGCGTTCGCCCCGATTTC 
           ::::: :    ::: ::  ::::  ::::  ::::: :::: ::  :  :::::::::    :::  :::::::::::: : ::::
3054035    CCGCTTCCGGTTTCGCCTTTGTCGCCAACGGCGGTATTGCGGACTTCGGCAACGCTTCCTTTTCTTTTGGCGTTCGCCCGGCTTTC 
Template:  FP929062.1 strand: - 579294-579388 ref: 579285-579389
Variable:  FP929062.1 strand: - 577307-577401 alnlen 94 mutations 14 involve-A 13 involve-T 1

579388     GCGTCGAACCGGGCGAACCGTGGGTACAACTCGGCCCGCAACTGGAATTACAACTCGTCCTCGAATCGGAACGTCAACCTCGGTTTCCGCCCCG (revcomp)
           ::::::  :::::::  ::::::::::: ::::::::::  ::::::::::  ::::::::::  :::: :::::: :: ::::::::::::::
577401     GCGTCGGGCCGGGCGTTCCGTGGGTACAGCTCGGCCCGCTGCTGGAATTACCTCTCGTCCTCGTTTCGGCACGTCAGCCGCGGTTTCCGCCCCG (revcomp)