Template:  JQ680377.1 strand: - 13133-13237 ref: 13134-13238
Variable:  JQ680377.1 strand: - 11147-11251 alnlen 104 mutations 14 involve-A 14 involve-T 0

13237      ACCCCGTACGCCGGCAACGCGTACAATGCGCGCAATGTCAACACGGACGGCAGTCTGAACAACAACAACGCGTACAATGGCAACAATGGCGTTCGGCCGGATTT (revcomp)
           ::::::::::::::: ::::::::  ::::::: ::::: ::::::::::::::::: :::::  :  :::::::  :::::::: :::::::::::::: :::
11251      ACCCCGTACGCCGGCTACGCGTACCTTGCGCGCTATGTCTACACGGACGGCAGTCTGGACAACGGCCGCGCGTACCTTGGCAACATTGGCGTTCGGCCGGCTTT (revcomp)
Template:  JQ680377.1 strand: - 13153-13237 ref: 13134-13238
Variable:  JQ680377.1 strand: - 36105-36189 alnlen 84 mutations 13 involve-A 13 involve-T 0

13237      ACCCCGTACGCCGGCAACGCGTACAATGCGCGCAATGTCAACACGGACGGCAGTCTGAACAACAACAACGCGTACAATGGCAAC (revcomp)
           ::::::::::::::::::::::::  :::::::  ::::  : ::::::::::::::: : :: :: ::::::::  :::::::
36189      ACCCCGTACGCCGGCAACGCGTACTTTGCGCGCTTTGTCTGCGCGGACGGCAGTCTGAGCCACTACGACGCGTACCTTGGCAAC (revcomp)
Template:  JQ680377.1 strand: - 13133-13237 ref: 13134-13238
Variable:  JQ680377.1 strand: - 44-148 alnlen 104 mutations 20 involve-A 20 involve-T 0

13237      ACCCCGTACGCCGGCAACGCGTACAATGCGCGCAATGTCAACACGGACGGCAGTCTGAACAACAACAACGCGTACAATGGCAACAATGGCGTTCGGCCGGATTT (revcomp)
           :::::::::::::::  :::::::  :::::::  ::::  ::::::::::::::::  : :: ::  :::::::  :::: ::  :::::::::::::: :::
148        ACCCCGTACGCCGGCCGCGCGTACGGTGCGCGCGGTGTCGGCACGGACGGCAGTCTGGGCTACGACGGCGCGTACTGTGGCTACGGTGGCGTTCGGCCGGCTTT (revcomp)