Template:  LCGO01000005.1 strand: + 17647-17773 ref: 17647-17773
Variable:  LCGO01000005.1 strand: + 17285-17411 alnlen 126 mutations 17 involve-A 14 involve-T 1

17647      TGGCAGTCTCCGGACGACTCGCTTTATCTGAAGGCAAATGATGACCGGCTCAACTTTGACGGCAGGGGCAATCTGGGTAATGCGAACGACAACTATTCTTCCGGCTTGCTGTTTCTGGGTAGTGCT 
           ::::::::::::: :::::::::::::::: : ::  ::::::::::::::   :::: :::::::::: :::::::: :::::: :: :  :: :::::::::::::::::::::::: ::::::
17285      TGGCAGTCTCCGGTCGACTCGCTTTATCTGGATGCCGATGATGACCGGCTCGGTTTTGGCGGCAGGGGCGATCTGGGTTATGCGAGCGGCCGCTGTTCTTCCGGCTTGCTGTTTCTGGGGAGTGCT