CRISPRone

CRISPRone report for GCA_000091545.1_ASM9154v1

♦ Seq 1: AP008227.1 Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence

⇒Summary: seq-len = 256992 bp; # of CRISPR array = 8; # of cas gene = 33  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18044-18306 bp 2 Locus 2: 131246-157896 bp 3 Locus 3: 189507-202078 bp 4 Locus 4: 227324-238867 bp Zoom in on locus 1 x4 Zoom in on locus 2 x3 x13 x10 x13 Zoom in on locus 3 x24 x21 Zoom in on locus 4 x13 CRISPR array Location: 18044-18306 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18044-18306 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09702:csx1 Type: Type-III Location: 131246-132451 bp Gene: cd09634:cas1 Type: universal Location: 132455-133402 bp CRISPR array Location: 133766-133950 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 133766-133950 bp Num of repeats: 3 Spacers: s4-s5 Gene: unk Type: unknown Location: 133966-134919 bp CRISPR array Location: 135156-136099 bp Num of repeats: 13 Spacers: s6-s17 CRISPR array Location: 135156-136099 bp Num of repeats: 13 Spacers: s6-s17 Gene: mkCas0081:cas2 Type: universal Location: 136129-136401 bp Gene: cd09680:cas10 Type: Type-III Location: 136457-138874 bp Gene: cd09647:csm2gr11 Type: Subtype-III-A Location: 138875-139279 bp Gene: cd09684:csm3gr7 Type: Type-III Location: 139291-140016 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 140026-140901 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 140898-142052 bp Gene: cd09747:csx1 Type: Type-III Location: 142063-143457 bp CRISPR array Location: 144129-144842 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 144129-144842 bp Num of repeats: 10 Spacers: s18-s26 Gene: unk Type: unknown Location: 144854-145807 bp CRISPR array Location: 146042-146983 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 146042-146983 bp Num of repeats: 13 Spacers: s27-s38 Gene: pfam09002:csx1 Type: Type-III Location: 147020-148930 bp Gene: unk Type: unknown Location: 149427-150146 bp Gene: unk Type: unknown Location: 150115-151080 bp Gene: unk Type: unknown Location: 151073-151483 bp Gene: cls000742:cas10 Type: Type-III Location: 151610-153364 bp Gene: cd09748:cmr3gr5 Type: Subtype-III-B Location: 153354-154439 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 154496-155623 bp Gene: cd09682:cmr4gr7 Type: Subtype-III-B Location: 155639-156499 bp Gene: cd09749:cmr5gr11 Type: Subtype-III-B Location: 156503-156847 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 156850-157896 bp CRISPR array Location: 189507-190947 bp Num of repeats: 24 Spacers: s39-s61 CRISPR array Location: 189507-190947 bp Num of repeats: 24 Spacers: s39-s61 Gene: pfam13280:WYL Type: other Location: 191138-192127 bp Gene: cd09641:cas3HD Type: Type-I Location: 192124-194886 bp Gene: cd09669:cas8e Type: Subtype-I-E Location: 194945-196444 bp Gene: cd09670:cse2gr11 Type: Subtype-I-E Location: 196564-196950 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 196947-198062 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 198064-198810 bp Gene: pfam08798:cas6e Type: other Location: 198797-199432 bp Gene: cd09719:cas1 Type: universal Location: 199442-200419 bp Gene: pfam09707:cas2 Type: universal Location: 200373-200750 bp CRISPR array Location: 200811-202078 bp Num of repeats: 21 Spacers: s62-s81 CRISPR array Location: 200811-202078 bp Num of repeats: 21 Spacers: s62-s81 CRISPR array Location: 227324-228237 bp Num of repeats: 13 Spacers: s82-s93 CRISPR array Location: 227324-228237 bp Num of repeats: 13 Spacers: s82-s93 Gene: cd09725:cas2 Type: universal Location: 228477-228761 bp Gene: cd09634:cas1 Type: universal Location: 228758-229735 bp Gene: pfam13280:WYL Type: other Location: 230736-231659 bp Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 231770-233977 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 233979-234860 bp Gene: cls000047:cas5 Type: Subtype-I-B Location: 234862-235653 bp Gene: cd09639:cas3 Type: Type-I Location: 235620-238073 bp Gene: cd09652:cas6 Type: other Location: 238073-238867 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18044-18306 bp]: array | spacers
           [Locus range 133766-133950 bp]: array | spacers
           [Locus range 135156-136099 bp]: array | spacers
           [Locus range 144129-144842 bp]: array | spacers
           [Locus range 146042-146983 bp]: array | spacers
           [Locus range 189507-190947 bp]: array | spacers
           [Locus range 200811-202078 bp]: array | spacers
           [Locus range 227324-228237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AP008226.1 Thermus thermophilus HB8 genomic DNA, complete genome

⇒Summary: seq-len = 1849742 bp; # of CRISPR array = 2; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79613-80571 bp 2 Locus 2: 872101-874734 bp Zoom in on locus 1 Zoom in on locus 2 x15 x5 Gene: pfam10040:cas6 Type: other Location: 79613-80332 bp Gene: mkCas0081:cas2 Type: universal Location: 80335-80571 bp CRISPR array Location: 872101-873199 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 872101-873199 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 874397-874734 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 874397-874734 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 872101-873199 bp]: array | spacers
           [Locus range 874397-874734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)