myRT

myRT report for GCA_000018105.1_ASM1810v1

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Seq: CP000828.1 Acaryochloris marina MBIC11017, complete genome (6503724 bp)
Overview 1 RT 1: 315739-319667 bp 2 RT 2: 4825262-4832485 bp 3 RT 3: 6295404-6301321 bp Neighborhood of RT #1 [315739, 319667] DDE_Tnp_1_5 COG3293 RVT-DGRs Neighborhood of RT #2 [4825262, 4832496] ERI-1_3'hExo_like RVT-Retrons WGR_MMR_like PQQ PQQ PRK11107 GAF_2 PRK11107 Neighborhood of RT #3 [6295404, 6301321] DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM HNHc COG4644 Feature: gene Location: 315739-315960 bp Feature: gene Location: 316020-316949 bp Ori: ABW25403.1 Feature: domain Description: DDE_Tnp_1_5 Location: 316068-316401 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 31 6068-31 6401 bp Feature: domain Description: COG3293 Location: 316476-316872 bp Feature: domain Description: COG3293 Location: 31 6476-31 6872 bp Feature: gene Location: 317020-317865 bp Ori: ABW25404.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 317026-317659 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 7026-31 7659 bp Feature: gene Location: 318184-318573 bp Feature: gene Location: 318828-319667 bp Feature: gene Location: 4825262-4825813 bp Ori: ABW29760.1 Feature: domain Description: ERI-1_3'hExo_like Location: 4825286-4825799 bp Feature: domain Description: ERI-1 _3'hExo_like Location: 4825286-4825799 bp Feature: gene Location: 4825896-4826405 bp Feature: gene Location: 4826885-4828315 bp Ori: ABW29762.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4827431-4828049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4827431 -4828049 bp Feature: gene Location: 4828299-4829720 bp Ori: ABW29763.1 Feature: domain Description: WGR_MMR_like Location: 4828314-4828515 bp Feature: domain Description: WGR_MMR_like Location: 482831 4-482851 5 bp Feature: domain Description: PQQ Location: 4828608-4829163 bp Feature: domain Description: PQQ Location: 4828608-48291 63 bp Feature: domain Description: PQQ Location: 4829220-4829403 bp Feature: domain Description: PQQ Location: 4829220-4829403 bp Feature: gene Location: 4829830-4832496 bp Ori: ABW29764.1 Feature: domain Description: PRK11107 Location: 4829848-4830433 bp Feature: domain Description: PRK1 1 1 07 Location: 4829848-4830433 bp Feature: domain Description: GAF_2 Location: 4830721-4830844 bp Feature: domain Description: GAF_2 Location: 4830721 -4830844 bp Feature: domain Description: PRK11107 Location: 4830886-4832485 bp Feature: domain Description: PRK1 1 1 07 Location: 4830886-4832485 bp Feature: gene Location: 6295404-6295568 bp Feature: gene Location: 6295695-6297842 bp Ori: ABW31157.1 Feature: domain Description: DUF4158 Location: 6295713-6296157 bp Feature: domain Description: DUF41 58 Location: 629571 3-62961 57 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6297429-6297828 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6297429-6297828 bp Feature: gene Location: 6298454-6300184 bp Ori: ABW31158.1 Feature: domain Description: RVT_N Location: 6298490-6298736 bp Feature: domain Description: RVT_N Location: 6298490-6298736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6298778-6299456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6298778-6299456 bp Feature: domain Description: GIIM Note: maturase Location: 6299564-6299789 bp Feature: domain Description: GIIM Note: maturase Location: 6299564-6299789 bp Feature: domain Description: HNHc Note: nucleases Location: 6299987-6300143 bp Feature: domain Description: HNHc Note: nucleases Location: 6299987-63001 43 bp Feature: gene Location: 6300297-6301097 bp Ori: ABW31159.1 Feature: domain Description: COG4644 Location: 6300303-6301005 bp Feature: domain Description: COG4644 Location: 6300303-6301 005 bp Feature: gene Location: 6301199-6301321 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CP000839.1 Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence (356087 bp)
Overview 1 RT 1: 272697-278778 bp Neighborhood of RT #1 [272697, 278778] DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 272697-274862 bp Ori: ABW32051.1 Feature: domain Description: DUF4158 Location: 272706-273171 bp Feature: domain Description: DUF4158 Location: 2 72 706-2 73171 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 274449-274848 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 74449-2 74848 bp Feature: gene Location: 275326-275451 bp Feature: gene Location: 275474-277204 bp Ori: ABW32053.1 Feature: domain Description: RVT_N Location: 275510-275756 bp Feature: domain Description: RVT_N Location: 2 75510-2 75756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275798-276476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 75798-2 76476 bp Feature: domain Description: GIIM Note: maturase Location: 276584-276809 bp Feature: domain Description: GIIM Note: maturase Location: 2 76584-2 76809 bp Feature: domain Description: HNHc Note: nucleases Location: 277007-277163 bp Feature: domain Description: HNHc Note: nucleases Location: 2 77007-2 77163 bp Feature: gene Location: 278230-278568 bp Feature: gene Location: 278632-278778 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CP000843.1 Acaryochloris marina MBIC11017 plasmid pREB6, complete sequence (172728 bp)
Overview 1 RT 1: 629-10086 bp 2 RT 2: 49539-54237 bp 3 RT 3: 170396-172085 bp Neighborhood of RT #1 [629, 10166] DUF772 DDE_Tnp_1_6 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM HNHc DUF4158 DDE_Tnp_Tn3 DUF772 DDE_Tnp_1_6 Neighborhood of RT #2 [49539, 54278] PRK00029 DDE_Tnp_1_assoc YhhI RVT_N RVT-GII GIIM HNHc Neighborhood of RT #3 [170396, 172126] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 629-2290 bp Ori: ABW32993.1 Feature: domain Description: DUF772 Location: 788-1007 bp Feature: domain Description: DUF772 Location: 788-1007 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1841-2210 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1841-2210 bp Feature: gene Location: 2785-3534 bp Ori: ABW33179.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 2788-3487 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2788-3 487 bp Feature: gene Location: 3698-5428 bp Ori: ABW33178.1 Feature: domain Description: RVT_N Location: 3734-3980 bp Feature: domain Description: RVT_N Location: 3 73 4-3 980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4022-4700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4022-4700 bp Feature: domain Description: GIIM Note: maturase Location: 4808-5033 bp Feature: domain Description: GIIM Note: maturase Location: 4808-503 3 bp Feature: domain Description: HNHc Note: nucleases Location: 5231-5387 bp Feature: domain Description: HNHc Note: nucleases Location: 523 1-53 87 bp Feature: gene Location: 6040-8187 bp Ori: ABW33177.1 Feature: domain Description: DUF4158 Location: 6058-6502 bp Feature: domain Description: DUF4158 Location: 6058-6502 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7774-8173 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7774-8173 bp Feature: gene Location: 8505-10166 bp Ori: ABW33176.1 Feature: domain Description: DUF772 Location: 8664-8883 bp Feature: domain Description: DUF772 Location: 8664-8883 bp Feature: domain Description: DDE_Tnp_1_6 Location: 9717-10086 bp Feature: domain Description: DDE_Tnp_1_6 Location: 9717-10086 bp Feature: gene Location: 49539-50849 bp Ori: ABW33124.1 Feature: domain Description: PRK00029 Location: 49629-50802 bp Feature: domain Description: PRK00029 Location: 49629-50802 bp Feature: gene Location: 50853-51533 bp Ori: ABW33123.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 50883-51144 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 50883 -51144 bp Feature: domain Description: YhhI Location: 51285-51453 bp Feature: domain Description: YhhI Location: 51285-51453 bp Feature: gene Location: 52548-54278 bp Ori: ABW33122.1 Feature: domain Description: RVT_N Location: 52584-52830 bp Feature: domain Description: RVT_N Location: 52584-5283 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52872-53550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52872-53 550 bp Feature: domain Description: GIIM Note: maturase Location: 53658-53883 bp Feature: domain Description: GIIM Note: maturase Location: 53 658-53 883 bp Feature: domain Description: HNHc Note: nucleases Location: 54081-54237 bp Feature: domain Description: HNHc Note: nucleases Location: 54081-5423 7 bp Feature: gene Location: 170396-172126 bp Ori: ABW32995.1 Feature: domain Description: RVT_N Location: 170432-170678 bp Feature: domain Description: RVT_N Location: 17043 2-170678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170720-171398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170720-1713 98 bp Feature: domain Description: GIIM Note: maturase Location: 171506-171731 bp Feature: domain Description: GIIM Note: maturase Location: 171506-17173 1 bp Feature: domain Description: HNHc Note: nucleases Location: 171929-172085 bp Feature: domain Description: HNHc Note: nucleases Location: 171929-172085 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CP000838.1 Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence (374161 bp)
Overview 1 RT 1: 257037-260485 bp 2 RT 2: 267397-270031 bp Neighborhood of RT #1 [257037, 260526] YncB RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [267397, 270031] DDE_Tnp_IS1 RVT-GII Acetyltransf_1 Feature: gene Location: 257037-257261 bp Feature: gene Location: 257477-257731 bp Ori: ABW31374.1 Feature: domain Description: YncB Location: 257519-257726 bp Feature: domain Description: YncB Location: 257519-257726 bp Feature: gene Location: 258796-260526 bp Ori: ABW31375.1 Feature: domain Description: RVT_N Location: 258832-259078 bp Feature: domain Description: RVT_N Location: 258832-259078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259120-259798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259120-259798 bp Feature: domain Description: GIIM Note: maturase Location: 259906-260131 bp Feature: domain Description: GIIM Note: maturase Location: 259906-260131 bp Feature: domain Description: HNHc Note: nucleases Location: 260329-260485 bp Feature: domain Description: HNHc Note: nucleases Location: 260329-2604 85 bp Feature: gene Location: 267397-267762 bp Feature: gene Location: 267774-268499 bp Ori: ABW31381.1 Feature: domain Description: DDE_Tnp_IS1 Location: 268149-268359 bp Feature: domain Description: DDE_Tnp_IS1 Location: 26814 9-268359 bp Feature: gene Location: 268576-268716 bp Ori: ABW31382.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268579-268708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268579-268708 bp Feature: gene Location: 268789-269334 bp Ori: ABW31383.1 Feature: domain Description: Acetyltransf_1 Location: 268882-269203 bp Feature: domain Description: Acetyltransf_1 Location: 268882-269203 bp Feature: gene Location: 269405-270031 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CP000840.1 Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence (273121 bp)
Overview 1 RT 1: 225840-231392 bp Neighborhood of RT #1 [225840, 231392] Phage_int_SAM_4 DUF4158 RVT-GII Feature: gene Location: 225840-226166 bp Ori: ABW32253.1 Feature: domain Description: Phage_int_SAM_4 Location: 225870-226092 bp Feature: domain Description: Phage_int_SAM_4 Location: 225 870-226092 bp Feature: gene Location: 226960-228750 bp Ori: ABW32254.1 Feature: domain Description: DUF4158 Location: 226969-227434 bp Feature: domain Description: DUF415 8 Location: 226969-227434 bp Feature: gene Location: 229079-230377 bp Ori: ABW32255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229337-230021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229337-230021 bp Feature: gene Location: 230445-230558 bp Feature: gene Location: 230913-231392 bp Sorry, your browser does not support inline SVG.
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