myRT

myRT report for GCA_000979475.1_gtlEnvA5udCFS

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Seq: JJOZ01000051.1 Methanosarcina sp. 2.H.T.1A.8 scaffold27_1_size48841-refined, whole genome shotgun sequence (48760 bp)
Overview 1 RT 1: 43762-48269 bp Neighborhood of RT #1 [43762, 48346] TM1601 PRK04176 RVT-GII Feature: gene Location: 43762-45486 bp Feature: domain Description: TM1601 Location: 43765-45475 bp Feature: domain Description: TM1 601 Location: 43765-45475 bp Feature: gene Location: 45998-46780 bp Feature: domain Description: PRK04176 Location: 46001-46772 bp Feature: domain Description: PRK041 76 Location: 46001 -46772 bp Feature: gene Location: 47639-48346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47750-48269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47750-48269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TM1601 (COG1031), PRK04176 (ribulose-1,5-biphosphate synthetase; Provisional), RVT-GII

Seq: JJOZ01000022.1 Methanosarcina sp. 2.H.T.1A.8 scaffold8_1_size146525-refined, whole genome shotgun sequence (146312 bp)
Overview 1 RT 1: 91899-98147 bp Neighborhood of RT #1 [91899, 98147] ElaC RnfB RVT-Retrons Cas_Cas1 Feature: gene Location: 91899-92654 bp Feature: domain Description: ElaC Location: 91902-92652 bp Feature: domain Description: ElaC Location: 91902 -92 652 bp Feature: gene Location: 93284-93481 bp Feature: domain Description: RnfB Location: 93287-93473 bp Feature: domain Description: RnfB Location: 932 87-93473 bp Feature: gene Location: 94363-95871 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94402-94957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94402 -94957 bp Feature: gene Location: 96049-97266 bp Feature: domain Description: Cas_Cas1 Location: 96097-96931 bp Feature: domain Description: Cas_Cas1 Location: 96097-96931 bp Feature: gene Location: 97263-98147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ElaC (COG1234), RnfB (COG2878), RVT-Retrons, Cas_Cas1 (pfam01867)