myRT

myRT report for GCA_000162755.2_ASM16275v2

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Seq: JH413829.1 Legionella drancourtii LLAP12 genomic scaffold scf_37, whole genome shotgun sequence (78044 bp)
Overview 1 RT 1: 1006-2931 bp 2 RT 2: 62230-67755 bp Neighborhood of RT #1 [1006, 2963] RVT-GII RVT-GII DUF932 Neighborhood of RT #2 [62230, 68207] SRAP PRK10276 RVT_N RVT-GII DDE_Tnp_Tn3 DUF4158 Feature: gene Location: 1006-1191 bp Ori: EHL30479.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 009-1 1 83 bp Feature: gene Location: 1256-1468 bp Ori: EHL30480.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1259-1454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 259-1 454 bp Feature: gene Location: 1697-1831 bp Feature: gene Location: 2172-2963 bp Ori: EHL30482.1 Feature: domain Description: DUF932 Location: 2247-2931 bp Feature: domain Description: DUF932 Location: 2247-2931 bp Feature: gene Location: 62230-62922 bp Ori: EHL30552.1 Feature: domain Description: SRAP Location: 62245-62878 bp Feature: domain Description: SRAP Location: 62245-62878 bp Feature: gene Location: 63273-63584 bp Ori: EHL30553.1 Feature: domain Description: PRK10276 Location: 63276-63576 bp Feature: domain Description: PRK1 0276 Location: 63276-63576 bp Feature: gene Location: 64204-64836 bp Ori: EHL30554.1 Feature: domain Description: RVT_N Location: 64258-64495 bp Feature: domain Description: RVT_N Location: 64258-64495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64546-64804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64546-64804 bp Feature: gene Location: 65141-67276 bp Ori: EHL30555.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 66011-67184 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6601 1 -671 84 bp Feature: gene Location: 67239-68207 bp Ori: EHL30556.1 Feature: domain Description: DUF4158 Location: 67281-67755 bp Feature: domain Description: DUF41 58 Location: 67281 -67755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF932 (pfam06067), SRAP (pfam02586), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), DDE_Tnp_Tn3 (pfam01526), DUF4158 (pfam13700)

Seq: JH413828.1 Legionella drancourtii LLAP12 genomic scaffold scf_36, whole genome shotgun sequence (91767 bp)
Overview 1 RT 1: 8345-13128 bp Neighborhood of RT #1 [8345, 13128] SgaA_N_like umuC RVT-GII GIIM HNH PRK10276 Feature: gene Location: 8345-8737 bp Ori: EHL30579.1 Feature: domain Description: SgaA_N_like Location: 8372-8714 bp Feature: domain Description: SgaA_N_like Location: 8372 -8714 bp Feature: gene Location: 8774-9898 bp Ori: EHL30580.1 Feature: domain Description: umuC Location: 8777-9887 bp Feature: domain Description: umuC Location: 8777-9887 bp Feature: gene Location: 10080-10907 bp Ori: EHL30581.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10089-10182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10089-10182 bp Feature: domain Description: GIIM Note: maturase Location: 10236-10470 bp Feature: domain Description: GIIM Note: maturase Location: 102 36-10470 bp Feature: domain Description: HNH Note: nucleases Location: 10722-10857 bp Feature: domain Description: HNH Note: nucleases Location: 1072 2 -10857 bp Feature: gene Location: 12212-12742 bp Ori: EHL30582.1 Feature: domain Description: PRK10276 Location: 12362-12734 bp Feature: domain Description: PRK102 76 Location: 12 362 -12 734 bp Feature: gene Location: 12901-13128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SgaA_N_like (cd07247), umuC (PRK03609), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JH413808.1 Legionella drancourtii LLAP12 genomic scaffold scf_16, whole genome shotgun sequence (256264 bp)
Overview 1 RT 1: 187657-191568 bp Neighborhood of RT #1 [187657, 191568] RVT-UG18 UPF0236 UPF0236 Feature: gene Location: 187657-188595 bp Feature: gene Location: 188635-188748 bp Feature: gene Location: 188878-189786 bp Ori: EHL31969.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 189100-189682 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 189100-189682 bp Feature: gene Location: 189930-191213 bp Ori: EHL31970.1 Feature: domain Description: UPF0236 Location: 189999-190236 bp Feature: domain Description: UPF023 6 Location: 189999-19023 6 bp Feature: domain Description: UPF0236 Location: 190734-191148 bp Feature: domain Description: UPF023 6 Location: 19073 4-191148 bp Feature: gene Location: 191230-191568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18, UPF0236 (pfam06782)

Seq: JH413839.1 Legionella drancourtii LLAP12 genomic scaffold scf_47, whole genome shotgun sequence (4069 bp)
Overview 1 RT 1: 1783-3771 bp Neighborhood of RT #1 [1783, 3776] HTH_XRE RelE RVT-GII GIIM RVT-GII Feature: gene Location: 1783-2100 bp Ori: EHL30028.1 Feature: domain Description: HTH_XRE Location: 1864-2014 bp Feature: domain Description: HTH_XRE Location: 1864 -2014 bp Feature: gene Location: 2090-2374 bp Ori: EHL30029.1 Feature: domain Description: RelE Location: 2102-2369 bp Feature: domain Description: RelE Location: 2102-2369 bp Feature: gene Location: 2529-3140 bp Ori: EHL30030.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2535-2751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2535-2751 bp Feature: domain Description: GIIM Note: maturase Location: 2838-3051 bp Feature: domain Description: GIIM Note: maturase Location: 2838-3051 bp Feature: gene Location: 3141-3776 bp Ori: EHL30031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345-3771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 5-3771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RelE (pfam06296), RVT-GII, GIIM (pfam08388)