myRT

myRT report for NC_003272.1

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Seq: NC_003272.1 Nostoc sp. PCC 7120, complete sequence (6413771 bp)
Overview 1 RT 1: 1724325-1735078 bp 2 RT 2: 3600893-3604709 bp 3 RT 3: 4209923-4213886 bp 4 RT 4: 5985728-5988102 bp 5 RT 5: 6205895-6211578 bp Neighborhood of RT #1 [1724325, 1735078] TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR HTH_XRE DUF4384 RVT-CRISPR cas1 Neighborhood of RT #2 [3600893, 3604816] COG4634 RVT-Retrons HTH_XRE SDR_c Neighborhood of RT #3 [4209923, 4213886] YfmG Avd_like RVT-DGRs Neighborhood of RT #4 [5985728, 5988122] DUF3598 YfmG RVT-DGRs Avd_like Neighborhood of RT #5 [6205895, 6211578] RVT_N RVT-GII McrA InsQ Feature: gene Location: 1724325-1727734 bp Feature: domain Description: TPR_10 Location: 1724481-1724595 bp Feature: domain Description: TPR_1 0 Location: 1 724481 -1 724595 bp Feature: domain Description: TPR_10 Location: 1724598-1724715 bp Feature: domain Description: TPR_1 0 Location: 1 724598-1 72471 5 bp Feature: domain Description: TPR_10 Location: 1724727-1724847 bp Feature: domain Description: TPR_1 0 Location: 1 724727-1 724847 bp Feature: domain Description: TPR_10 Location: 1724853-1724973 bp Feature: domain Description: TPR_1 0 Location: 1 724853-1 724973 bp Feature: domain Description: TPR_10 Location: 1724985-1725099 bp Feature: domain Description: TPR_1 0 Location: 1 724985-1 725099 bp Feature: domain Description: TPR_10 Location: 1725105-1725225 bp Feature: domain Description: TPR_1 0 Location: 1 7251 05-1 725225 bp Feature: domain Description: TPR_10 Location: 1725375-1725474 bp Feature: domain Description: TPR_1 0 Location: 1 725375-1 725474 bp Feature: domain Description: TPR_10 Location: 1725483-1725603 bp Feature: domain Description: TPR_1 0 Location: 1 725483-1 725603 bp Feature: domain Description: TPR Location: 1725615-1725675 bp Feature: domain Description: TPR Location: 1 72561 5-1 725675 bp Feature: gene Location: 1728408-1729151 bp Feature: domain Description: HTH_XRE Location: 1728456-1728603 bp Feature: domain Description: HTH_XRE Location: 1 728456-1 728603 bp Feature: domain Description: DUF4384 Location: 1728777-1729008 bp Feature: domain Description: DUF4384 Location: 1 728777-1 729008 bp Feature: gene Location: 1729649-1731655 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1729832-1730441 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 729832-1 730441 bp Feature: domain Description: cas1 Location: 1730660-1731629 bp Feature: domain Description: cas1 Location: 1 730660-1 731 629 bp Feature: gene Location: 1733488-1734309 bp Feature: gene Location: 1734362-1735078 bp Feature: gene Location: 3600893-3601225 bp Feature: domain Description: COG4634 Location: 3600899-3601220 bp Feature: domain Description: COG4634 Location: 3600899-3601 220 bp Feature: gene Location: 3601306-3602067 bp Feature: gene Location: 3602089-3603003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3602251-3602791 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3602251 -3602791 bp Feature: gene Location: 3602990-3603298 bp Feature: domain Description: HTH_XRE Location: 3603002-3603164 bp Feature: domain Description: HTH_XRE Location: 3603002-36031 64 bp Feature: gene Location: 3603935-3604816 bp Feature: domain Description: SDR_c Location: 3604013-3604709 bp Feature: domain Description: SDR_c Location: 360401 3-3604709 bp Feature: gene Location: 4209923-4210762 bp Feature: domain Description: YfmG Location: 4209980-4210742 bp Feature: domain Description: YfmG Location: 4209980-421 0742 bp Feature: gene Location: 4210972-4211316 bp Feature: domain Description: Avd_like Location: 4210990-4211296 bp Feature: domain Description: Avd_like Location: 421 0990-421 1 296 bp Feature: gene Location: 4211334-4212392 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4211538-4212276 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 421 1 538-421 2276 bp Feature: gene Location: 4212789-4213049 bp Feature: gene Location: 4213299-4213886 bp Feature: gene Location: 5985728-5986171 bp Feature: domain Description: DUF3598 Location: 5985758-5986163 bp Feature: domain Description: DUF3598 Location: 5985758-59861 63 bp Feature: gene Location: 5986310-5986483 bp Feature: domain Description: YfmG Location: 5986316-5986421 bp Feature: domain Description: YfmG Location: 598631 6-5986421 bp Feature: gene Location: 5986506-5987474 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5986611-5987313 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 598661 1 -598731 3 bp Feature: gene Location: 5987538-5987726 bp Feature: gene Location: 5987778-5988122 bp Feature: domain Description: Avd_like Location: 5987796-5988102 bp Feature: domain Description: Avd_like Location: 5987796-59881 02 bp Feature: gene Location: 6205895-6206260 bp Feature: gene Location: 6206589-6207287 bp Feature: gene Location: 6207390-6208967 bp Feature: RT Description: RVT_N Location: 6207423-6207666 bp Feature: RT Description: RVT_N Location: 6207423-6207666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6207720-6208374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6207720-6208374 bp Feature: domain Description: McrA Location: 6208605-6208944 bp Feature: domain Description: McrA Location: 6208605-6208944 bp Feature: gene Location: 6209607-6210848 bp Feature: domain Description: InsQ Location: 6209610-6210720 bp Feature: domain Description: InsQ Location: 620961 0-621 0720 bp Feature: gene Location: 6211060-6211578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_10 (pfam13374), TPR (smart00028), HTH_XRE (smart00530), DUF4384 (pfam14326), cas1 (TIGR00287), COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), SDR_c (cd05233), YfmG (COG1262), Avd_like (cd16376), DUF3598 (pfam12204)
RVT_N (pfam13655), McrA (COG4058), InsQ (COG0675)