CRISPRone

CRISPRone report for GCA_000834965.1_ASM83496v1

♦ Seq 1: CP010103.1 Francisella tularensis subsp. novicida strain DPG 3A-IS, complete genome

⇒Summary: seq-len = 2005074 bp; # of CRISPR array = 2; # of cas gene = 10  (type II, V) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 568439-575286 bp 2 Locus 2: 1292328-1302743 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 Gene: AJJ47668.1:mkCas0192:cas12a Type: Subtype-V-A Location: 568439-572341 bp Gene: AJJ46892.1:cd09637:cas4 Type: other Location: 572449-573003 bp Gene: AJJ46478.1:cd09634:cas1 Type: universal Location: 573007-574011 bp Gene: AJJ47322.1:pfam09827:cas2 Type: universal Location: 573992-574264 bp CRISPR array Location: 574404-575286 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 574404-575286 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1292328-1292866 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 1292328-1292866 bp Num of repeats: 8 Spacers: s14-s20 Gene: AJJ47963.1:pfam00078:RT Type: other Location: 1293410-1294402 bp Gene: AJJ47946.1:cd09637:cas4 Type: Subtype-II-B Location: 1294520-1295020 bp Gene: AJJ47599.1:pfam09827:cas2 Type: Subtype-II-B Location: 1295007-1295300 bp Gene: AJJ47478.1:pfam01867:cas1 Type: Subtype-II-B Location: 1295458-1296414 bp Gene: AJJ46981.1:cd09704:cas9 Type: Subtype-II-B Location: 1296395-1301284 bp Gene: AJJ47970.1:pfam00078:RT Type: other Location: 1301751-1302743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 574404-575286 bp]: array | spacers
           [Locus range 1292328-1292866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)