CRISPRone

CRISPRone report for GCA_000014485.1_ASM1448v1

♦ Seq 1: CP000419.1 Streptococcus thermophilus LMD-9, complete genome

⇒Summary: seq-len = 1856368 bp; # of CRISPR array = 3; # of cas gene = 16  (type II, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 643235-650217 bp 2 Locus 2: 895636-904257 bp 3 Locus 3: 1377229-1384363 bp Zoom in on locus 1 x17 Zoom in on locus 2 x4 Zoom in on locus 3 x9 Gene: ABJ65965.1:cd09643:cas9 Type: Subtype-II-A Location: 643235-646600 bp antiRepeat Location: 646666-646704 bp Strand: + Match length: 31 bp Mismatch: 5 bp Gene: ABJ65966.1:cd09720:cas1 Type: Subtype-II-A Location: 646777-647688 bp Gene: ABJ65967.1:pfam09827:cas2 Type: Subtype-II-A Location: 647690-648013 bp Gene: ABJ65968.1:cd12217:csn2 Type: Subtype-II-A Location: 648010-649062 bp CRISPR array Location: 649125-650217 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 649125-650217 bp Num of repeats: 17 Spacers: s1-s16 Gene: ABJ66187.1:cd09634:cas1 Type: universal Location: 895636-896640 bp Gene: ABJ66188.1:cd09725:cas2 Type: universal Location: 896640-896969 bp CRISPR array Location: 897070-897331 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 897070-897331 bp Num of repeats: 4 Spacers: s17-s19 Gene: ABJ66189.1:cd09652:cas6 Type: other Location: 897458-898189 bp Gene: ABJ66190.1:cd09647:csm2gr11 Type: Subtype-III-A Location: 900443-900823 bp Gene: ABJ66191.1:COG1337:csm3gr7 Type: Subtype-III-D Location: 900823-901485 bp Gene: ABJ66192.1:COG1567:csm4gr5 Type: Subtype-III-A Location: 901487-902386 bp Gene: ABJ66193.1:cd09726:csm3gr7 Type: Subtype-III-D Location: 902389-903462 bp Gene: ABJ66194.1:unk Type: unknown Location: 903459-903554 bp Gene: ABJ66195.1:cd09699:csm6 Type: Subtype-III-A Location: 903661-904257 bp CRISPR array Location: 1377229-1377794 bp Num of repeats: 9 Spacers: s20-s27 CRISPR array Location: 1377229-1377794 bp Num of repeats: 9 Spacers: s20-s27 Gene: ABJ66633.1:cd09758:csn2 Type: Subtype-II-A Location: 1378116-1378775 bp Gene: ABJ66634.1:cd09638:cas2 Type: Subtype-II-A Location: 1378765-1379109 bp Gene: ABJ66635.1:cd09720:cas1 Type: Subtype-II-A Location: 1379106-1379975 bp Gene: ABJ66636.1:cd09643:cas9 Type: Subtype-II-A Location: 1379975-1384141 bp antiRepeat Location: 1384328-1384363 bp Strand: - Match length: 27 bp Mismatch: 9 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 649125-650217 bp]: array | spacers
           [Locus range 897070-897331 bp]: array | spacers
           [Locus range 1377229-1377794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)