myDGR

myDGR report for SRS043701_LANL_scaffold_6522

Seq: SRS043701_LANL_scaffold_6522 (58173 bp)

Download:  annotation in gff; reverse transcriptase (RT); target gene; accessory gene

Explore:   TR-VR alignment (colored, MSA); domain organization of the target protein(s); similar RTs

Visualize: summary of the putative DGR system(s) (explain)

Overview 1 Locus 1: 82-17755 bp 2 Locus 2: 35622-56738 bp Zoom in on locus 1 Zoom in on locus 2 Feature: CDS Location: 82-339 bp Feature: CDS Location: 339-551 bp Feature: CDS Location: 584-1066 bp Feature: CDS Location: 1233-1484 bp Feature: CDS Location: 1486-2037 bp Feature: CDS Location: 2292-2579 bp Feature: CDS Location: 2576-4570 bp Feature: CDS Location: 4582-5571 bp Feature: CDS Location: 5571-6305 bp Feature: CDS Location: 6308-6673 bp Feature: CDS Location: 6663-7115 bp Feature: target Des: target gene diversified by DGR Location: 7235-7816 bp Feature: CDS Location: 7813-8187 bp Feature: CDS Location: 8184-8612 bp Feature: CDS Location: 8642-9400 bp Feature: CDS Location: 9411-10244 bp Feature: CDS Location: 10168-10824 bp Feature: CDS Location: 10821-11384 bp Feature: CDS Location: 11404-11892 bp Feature: CDS Location: 11894-12349 bp Feature: CDS Location: 12351-12557 bp Feature: CDS Location: 12547-13359 bp Feature: CDS Location: 13356-13928 bp Feature: CDS Location: 13933-14325 bp Feature: CDS Location: 14322-14762 bp Feature: CDS Location: 14777-15199 bp Feature: CDS Location: 15201-16319 bp Feature: CDS Location: 16297-16908 bp Feature: CDS Location: 16945-17184 bp Feature: CDS Location: 17288-17755 bp Feature: CDS Location: 35622-35849 bp Feature: CDS Location: 35846-36253 bp Feature: CDS Location: 36257-36730 bp Feature: CDS Location: 36738-37271 bp Feature: CDS Location: 37280-37483 bp Feature: CDS Location: 37476-42314 bp Feature: CDS Location: 42311-43279 bp Feature: CDS Location: 43269-44006 bp Feature: CDS Location: 44008-44769 bp Feature: target Des: target gene diversified by DGR Location: 44808-46235 bp Feature: CDS Location: 46266-46415 bp Feature: RT Des: DGR reverse transcriptase Location: 46533-47573 bp Feature: CDS Location: 47554-47931 bp Feature: accessory Des: PAG1 Location: 47928-48245 bp Feature: CDS Location: 48251-52267 bp Feature: CDS Location: 52272-52754 bp Feature: CDS Location: 52830-53444 bp Feature: CDS Location: 53704-54303 bp Feature: CDS Location: 54296-54883 bp Feature: CDS Location: 55183-55323 bp Feature: CDS Location: 55333-56070 bp Feature: CDS Location: 56403-56738 bp Sorry, your browser does not support inline SVG.