Table: a summary of the spacer graphs derived from the CRISPR arrays identified in long reads (SRR2822456).

Group: groups of CRISPR arrays sharing spacers;
Graph (spacer graph): pdf -- to see/download spacer graph in pdf format; dot -- to show the dot file of the graph; array -- to show the spacer arrays;
Representative seq: click on representative sequence to see the CRISPR-cas annotation of that sequence;
CRISPRdirect: the direction prediction by CRISPRdirect; confidence -- CRISPRdirect prediction confidence; consistent/opposite -- if the CRISPRdirect predicted orientation is consistent or opposite to our prediction.
Representive seqs:
Group (Module)GraphRepresentative seqsCRISPRdirect
group1
pdf dot array		 SRR2822456.72150R (type II with cas9)
SRR2822456.1043811R (type II with cas9)
SRR2822456.611846(truncated cas)		SRR2822456.72150R (confidence: medium; consistent)
group2
pdf dot array		SRR2822456.1197054 (type III)
SRR2822456.804023 (type III)
SRR2822456.384328R		SRR2822456.1197054 (confidence: medium; consistent)
group3
pdf dot array		 SRR2822456.403571(type V with cas12)
SRR2822456.403571 (type V with cas12)
SRR2822456.1186552R		SRR2822456.403571 (confidence: high; consistent)
group4 (283 reads)
pdf dot array		 SRR2822456.436022(NONE of the arrays have adjacent cas genes)SRR2822456.436022 (confidence:medium; opposite)
group5
pdf dot array		 SRR2822456.1192283 (type I, complete array with spacers 106-128)
SRR2822456.283403 (type I, complete array with spacers 83-86, 97, 99-105, 128)		SRR2822456.1192283 (confidence:High; consitent)
group6 (132 reads)
pdf dot array		 SRR2822456.1000193R (type II)
SRR2822456.512911
SRR2822456.992217		SRR2822456.1000193R (confidence:Low; consistent)
group7
pdf dot array		SRR2822456.856242R
SRR2822456.300651R (type II)
SRR2822456.749151
SRR2822456.1154350
SRR2822456.893774
SRR2822456.877704
SRR2822456.130665		SRR2822456.856242R (confidence:High; opposite)
group8
pdf dot array		SRR2822456.109676R (False CRISPR based on manual inspection)
NO prediction
group9
pdf dot array		 SRR2822456.313590R (long array with >100 spacers; cas1 & cas2)
SRR2822456.888591 SRR2822456.1096914 SRR2822456.827504 SRR2822456.232975 (type I) SRR2822456.571190(type I) SRR2822456.350386 (type I)		SRR2822456.313590R (confidence:High; consistent)
group10
pdf dot array		 SRR2822456.230461 (type II) SRR2822456.488917 SRR2822456.86524 SRR2822456.507024SRR2822456.230461R (confidence:High; consistent)
group11
pdf dot array		 Note: One spacer (#2) is shared by two groups of arrays
repeats: (similar)
GTCGCACTCTCACGAGTGCGTGGATTGAAAC (SRR2822456.1066806)
GTCGCACCCTCACGGGTGCGTGGATTGAAAC (SRR2822456.69522)
shared spacer #2 (identical):
CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG
No adjacent cas genes. This graph can be split into two as shown in group11a and group11b, see below
group11a
pdf dot array		SRR2822456.1066806
SRR2822456.1066806 (confidence:High; consistent)
group11b
pdf dot array		SRR2822456.704094R
SRR2822456.69522		SRR2822456.704094R (confidence:High; consistent)
group12
pdf dot array		 SRR2822456.988285 (type II)SRR2822456.988285 (confidence:Medium; consistent)
group13
pdf dot array		 SRR2822456.211534 (type VI cas13d)SRR2822456.211534 (confidence:High; consistent)
group14
pdf dot array		 SRR2822456.705397 (type II)SRR2822456.705397 (confidence:High; consistent)
group15
pdf dot array		 SRR2822456.636808R
SRR2822456.1044072 (type I)		SRR2822456.636808R_(confidence:High; consistent)
group16
pdf dot array		 SRR2822456.199049R
SRR2822456.1108212 (no adjacent cas genes)
SRR2822456.1162775		SRR2822456.199049R (confidence:High; consistent)
group17
pdf dot array		 SRR2822456.582826
SRR2822456.815062 (no adjacent cas genes)		SRR2822456.582826 (confidence:High; opposite)
group18
pdf dot array		 SRR2822456.1017314R
SRR2822456.875093
SRR2822456.656046
SRR2822456.206102 (type II with cas9)		SRR2822456.1017314R (confidence:High; opposite)
group19
pdf dot array		 SRR2822456.112499 SRR2822456.757124 SRR2822456.780588NO prediction
group20
pdf dot array		 SRR2822456.1025639R
SRR2822456.907682 (type I)		SRR2822456.1025639R (confidence:High; consistent)
group21
pdf dot array		 SRR2822456.969290 SRR2822456.1136253NO prediction
group22
pdf dot array		 SRR2822456.796652
SRR2822456.1081273 (type I) 		SRR2822456.796652 (confidence:High; consistent)
group23
pdf dot array		 SRR2822456.915270
SRR2822456.851534 (type II with cas)		SRR2822456.915270 (confidence:Low; consistent)
group24
pdf dot array		 SRR2822456.334181 (type I)SRR2822456.334181 (confidence:High; consistent)
group25
pdf dot array		 SRR2822456.1126259R
SRR2822456.1025639 (type I)		SRR2822456.1126259R (confidence:Low; consistent)
group26
pdf dot array		split into 26a and 26b
group26a
pdf dot array		SRR2822456.825028
SRR2822456.825028 (confidence:Medium; reverse)
group26b
pdf dot array		SRR2822456.552564
SRR2822456.826847R
SRR2822456.552564 (confidence:Medium; opposite
group27
pdf dot array		 SRR2822456.825028 SRR2822456.552564NO prediction
group28
pdf dot array		SRR2822456.455839 (127 spacers)
SRR2822456.489129R (99 spacers + cas genes)
SRR2822456.1155522R (66 spacers + type I cas genes)
SRR2822456.73169 (15 spacers, type I cas genes)
SRR2822456.556824 (14 spacers, type I cas genes)
SRR2822456.455839 (confidence:High; consistent)
group29
pdf dot array		SRR2822456.1165837 (type II with cas9)SRR2822456.1165837 (confidence:Medium; consistent)
group30
pdf dot array		SRR2822456.401720R (type II)SRR2822456.401720R (confidence:Medium; consistent)
group31
pdf dot array		 SRR2822456.1222994 SRR2822456.603500 SRR2822456.1035384 SRR2822456.980690 SRR2822456.1153141No prediction
group32
pdf dot array		SRR2822456.943587 (type I)
SRR2822456.1181141
SRR2822456.822500
SRR2822456.519688
SRR2822456.313898
SRR2822456.461386
SRR2822456.359519
SRR2822456.673038
SRR2822456.461387
SRR2822456.771253
SRR2822456.359290
SRR2822456.359693
SRR2822456.822499
SRR2822456.255262		SRR2822456.943587 (confidence:High; consistent)
group33
pdf dot array		 SRR2822456.108078 SRR2822456.532595 SRR2822456.834266NO prediction
group34
pdf dot array		 SRR2822456.404228 SRR2822456.317756 SRR2822456.703390NO prediction
group35
pdf dot array		 SRR2822456.137803R
SRR2822456.866212 SRR2822456.115080 SRR2822456.430518 SRR2822456.1146174 SRR2822456.236179 SRR2822456.1027967		SRR2822456.137803R (confidence:High; consistent)
group36
pdf dot array		 SRR2822456.574589SRR2822456.574589 (confidence:High; consistent)
group37
pdf dot array		 SRR2822456.958174 SRR2822456.868874 SRR2822456.962556SRR2822456.958174R (confidence:Medium; consistent)
group38pdf dot array SRR2822456.711325R
SRR2822456.710033 SRR2822456.7325 SRR2822456.126050 SRR2822456.70556 SRR2822456.38099 SRR2822456.319215 SRR2822456.1162907		SRR2822456.711325R (confidence:Medium; consistent)
group39
pdf dot array		 SRR2822456.749481NO prediction
group40
pdf dot array		 SRR2822456.810761 SRR2822456.437273 SRR2822456.526530 SRR2822456.534885 SRR2822456.857298SRR2822456.438658R (confidence:High; consistent)
group41
pdf dot array		 SRR2822456.460489 SRR2822456.1225642 SRR2822456.290836NO prediction